I went through all the hardware bags (43 in all) and separated everything into individual storage bins. This took several days to finish, working a fews hours each night after work.
I combined like parts from the Wing kit and the Empennage kit together in the same bin. I used my labeler to make labels to indicate the bag number and part number. If the part came with both kits, I put both bag numbers on the label.
Keeping the small parts organized has really come in handy when I need the parts during the assembly.