I finished the long return line and filter bypass line which attaches to the manifold up front, tightened the spacer under the two bulkhead fittings and reconnected the fittings (not torqued). I found that you need to countersink the bottom of the plastic "holders" in the main channel in order to get them to fit over the nuts on the studs and sit flush to the floor.
On to the pedals!
Fitting the filter bypass line
What happens if you don't countersink the bottom of the plastic holders